Chapter 3 – The Human Body and Digestion
3.3 The Digestive Process
Before the nutrients in food can nourish your body, digestion must split food into smaller molecules that can be absorbed into the bloodstream and delivered to cells throughout the body.
Digestion is a coordinated process involving specialized organs and enzymes that work together to break food into molecules that can be absorbed. Let’s begin by looking at the organs that carry out digestion.
Before reading further, watch the video below to see how the digestive system works in action.
How Your Digestive System Works.” by Emma Bryce for TED Ed, June 17, 2020. 4:57 minutes
Overview of the Organs Involved in Digestion
Each digestive organ performs a specialized job, but they all work together to digest food, absorb nutrients, and eliminate waste. Most digestion and nutrient absorption occur in the small intestine.
To better understand how the digestive system works, it helps to divide its organs into two groups:
- The gastrointestinal (GI) tract
- The accessory organs
THE GASTROINTESTINAL (GI) TRACT
The gastrointestinal (GI) tract is a continuous muscular tube—about 25 feet long—that extends from the mouth to the anus. As food travels through the esophagus, stomach, small intestine, large intestine, rectum, and anus, it is mechanically and chemically converted into forms the body can absorb.

Although food passes through the GI tract, the inside of this tube is technically considered outside the body until nutrients cross the intestinal wall and enter the bloodstream.
THE ACCESSORY ORGANS
Despite their name, the accessory organs are essential to digestion. They include the salivary glands, and the liver, gallbladder, and pancreas. Although food never enters these organs, they produce and secrete saliva, bile, and digestive enzymes into the gastrointestinal (GI) tract to help digest food.
These secretions—including enzymes, bile, and other digestive fluids—work together with the GI tract to convert food into nutrients your body can absorb and use. Unlike enzymes, bile does not chemically digest food. Instead, it breaks large fat droplets into smaller droplets, increasing their surface area and making them easier for the enzyme lipase to digest.
| Organ | Major Digestive Secretions |
|---|---|
| Salivary glands | Salivary amylase |
| Stomach | Hydrochloric acid, pepsin |
| Pancreas | Amylase, lipase, proteases |
| Liver | Produces bile (helps digest fats) |
| Gallbladder | Stores bile |
| Small intestine | Brush border enzymes |
Note: The gallbladder does not produce bile. Instead, it stores and concentrates bile made by the liver before releasing it into the small intestine when fatty foods are eaten.
Overview of the Digestive Process
Digestion occurs in five major steps: ingestion, mechanical digestion, chemical digestion, absorption, and excretion. Together, these steps convert food into nutrients the body can absorb and use.
INGESTION
Ingestion begins when food enters the gastrointestinal (GI) tract through the mouth. Chewing (mastication)—the first stage of mechanical digestion—splits food into smaller pieces and mixes it with saliva.
MOVEMENT THROUGH THE ESOPHAGUS
After chewing, food forms a soft mass called a bolus. The tongue and throat muscles push the bolus into the esophagus, a muscular tube connecting the throat to the stomach.
The bolus travels to the stomach by peristalsis—rhythmic, wave-like muscle contractions that move food through the digestive tract. Peristalsis is so effective that it can move food even if a person is upside down.

As food moves through the digestive tract, it is broken down by two complementary processes: mechanical digestion and chemical digestion.
MECHANICAL DIGESTION
Mechanical digestion physically breaks food into smaller pieces without changing its chemical composition. It begins with chewing and continues as muscles in the stomach churn food into a semiliquid mixture called chyme. In the small intestine, muscular contractions continue mixing chyme with digestive secretions.
SEGMENTATION
Unlike peristalsis, which moves food forward, segmentation occurs mainly in the small intestine and repeatedly mixes chyme with digestive juices. This mixing increases contact between nutrients and the intestinal lining, improving digestion and absorption.

CHEMICAL DIGESTION
Chemical digestion uses enzymes and other digestive secretions to break large nutrient molecules into smaller molecules that can be absorbed. For example, enzymes break starch into glucose, a simple sugar.
Enzymes are specialized proteins that speed up chemical reactions without being used up. Different enzymes digest carbohydrates, proteins, and fats into molecules small enough to cross the intestinal wall.
One important chemical reaction is hydrolysis, in which water helps split large molecules into smaller ones. For example, the enzyme sucrase breaks sucrose into glucose and fructose, which can then be absorbed.
ABSORPTION
After digestion, nutrients move from the small intestine into the bloodstream through a process called absorption. Most carbohydrates, proteins, vitamins, minerals, and water enter the bloodstream directly. Most fats are absorbed into the lymphatic system before entering the bloodstream.
EXCRETION
The final step of digestion is excretion. Materials that cannot be digested or absorbed move into the large intestine, where water is removed before the remaining waste forms feces. The feces are stored in the rectum until they are eliminated through the anus.
Functions of the Digestive Organs
Now let’s follow a meal through the digestive system and see how each organ helps turn food into nutrients your body can absorb and use.
Imagine eating a peanut butter and jelly sandwich. It contains all six classes of nutrients—carbohydrates, proteins, fats, vitamins, minerals, and water—making it a useful example for following digestion from start to finish.

Every organ in the digestive system has a specialized role in breaking down food, absorbing nutrients, and eliminating waste. The table below follows a peanut butter and jelly sandwich as it travels through your digestive tract to see what happens at each step.
| Organ | Main Function | What Happens to the PB&J Sandwich? | Outcome |
|---|---|---|---|
| Mouth | Begins digestion | You take a bite. Your teeth crush the PBJ as saliva begins digesting carbohydrates while moistening the food. | A soft bolus forms and is ready to swallow. |
| Esophagus | Transport | The bolus slides down your esophagus as wave-like muscle contractions push it toward the stomach. | Bolus reaches the stomach. |
| Stomach | Mixing and digestion | The PBJ (bolus) is churned and mixed with acid and enzymes, creating a thick, soupy mixture. | Chyme forms and enters the small intestine. |
| Small Intestine | Digestion and absorption | Enzymes break down bread into simple sugars, fats into fatty acids, and proteins into amino acids. Vitamins and minerals require little to no digestion before being absorbed. | Nutrients are absorbed into the bloodstream and lymphatic system. |
| Large Intestine | Water absorption | Most nutrients have been absorbed. Water is removed, and beneficial bacteria break down some remaining fiber and other undigested material. | Feces begin to form. |
| Rectum & Anus | Elimination | The remaining waste, called feces, is stored in the rectum until it is eliminated from the body through the anus. | Digestion is complete. |
Although little digestion by human enzymes occurs in the large intestine, it is home to trillions of microorganisms collectively called the gut microbiome. These microbes ferment some of the fiber that escapes digestion in the small intestine, producing compounds that nourish colon cells, support immune function, and synthesize vitamin K and some B vitamins.
Diet strongly influences the gut microbiome. Fermented foods provide beneficial microorganisms (probiotics), while certain fibers (prebiotics) nourish the helpful bacteria already living in your intestine.
Figure 3.11 provides a visual summary of where digestion and absorption occur throughout the digestive tract.

Pre- and Probiotics: What’s the Difference?

You’ve probably seen a lot in the media about probiotics and prebiotics—but what do they actually do?
Probiotics are live bacteria that can benefit your health, especially your digestive system. Even though bacteria often get a bad reputation, these are the “good” or “friendly” bacteria that help keep your gut healthy. A common type is lactobacilli, which are found in fermented foods like yogurt.
Prebiotics, on the other hand, are not bacteria. They are types of fiber that your body cannot digest. Instead, they act as food for the good bacteria already living in your large intestine, helping them grow and thrive.
Think of it this way:
- Probiotics = the good bacteria
- Prebiotics = the food that helps those bacteria grow
Research shows that probiotics can help reduce certain types of diarrhea (especially those caused by viruses) and may improve symptoms of lactose intolerance. Scientists are continuing to study these topics, and more health benefits may become clearer as research grows.
As interest in gut health increases, researchers are also working to better understand:
- Which specific strains of bacteria are most beneficial
- How much (dose) is needed for health effects
- Which foods or supplements are most effective
For now, including a variety of fiber-rich foods and fermented foods in your diet is a simple way to support a healthy gut.
Class Discussion Questions
- Why do you think digestion requires both mechanical digestion (such as chewing and stomach churning) and chemical digestion (such as enzymes and digestive juices)? Could your body absorb nutrients effectively if only one of these processes occurred? Explain your reasoning.
- Imagine a person with a digestive disorder that prevents nutrients from being properly absorbed in the small intestine. How might this affect their health, even if they were eating enough food?
- The large intestine is home to trillions of microorganisms that make up the gut microbiome. What dietary habits might help support a healthy gut microbiome, and why do you think scientists are increasingly interested in studying the relationship between gut bacteria and overall health?
Review Questions
Attributions
This section is an adaptation of “The Digestive System” in Nutrition: Science and Everyday Applications, V.1.0 by Alice Callahan, Heather Leonard, and Tamberly Powell under a Creative Commons Attribution-NonCommercial 4.0 International License.
A protein molecule that speeds up or accelerates specific chemical reactions without changing itself.
A gland in the mouth that produces saliva, which moistens food and begins the digestion of carbohydrates.
A large organ that produces bile to help digest fats and performs many important functions, including processing nutrients and removing harmful substances from the blood.
A digestive fluid made in the liver, stored in the gallbladder, and released in the small intestines where it aids lipid digestion.
The physical breakdown of food into smaller pieces without changing its chemical composition. This process increases the surface area of food, making it easier for digestive enzymes to work.
A small ball of food formed after chewing in the mouth that travels down the esophagus once swallowed.
A mixture of partially digested food and gastric secretions in the stomach.
A 6-carbon monosaccharide that is the major carbohydrate used to provide energy in the body.
A disaccharide made of glucose linked to fructose and commonly known as table sugar.
A 6-carbon monosaccharide arranged in a ring structure that is found in fruits and honey.
All of the microorganisms in and on the body that have beneficial effects.